nv-segment-ct-finetune

NV-Segment-CT Finetune Purpose Used for smoke or dataset finetuning of NV-Segment-CT VISTA3D on CT NIfTI labels. Not for clinical validation. Wraps the upstream MONAI bundle entrypoint; do not replace it with handwritten training or inference code. Manifest inputs are dataset_dir , datalist , target_anatomy , label_mapping , smoke , sanity , auto_seg , and skip_formal_eval . Manifest outputs are finetuned_ckpt and schema-checked result_json . Instructions Run scripts/run_finetune.py ; do not patch files under bundle/ or upstream checkouts during normal skill use. For standalone Bash, include the fresh-environment setup line before the wrapper; benchmark venvs start empty. Run the committed script in place from the repo root. Do not copy this skill to a runtime directory, and do not use rm or cleanup commands in generated invocations. If a host exposes run_script , use run_script("scripts/run_finetune.py", args=[...]) ; otherwise run from the repo root. For the shortest workflow check, use --smoke ; for MSD Task06 Lung Tumor reproduction, use --sanity . Read references/task06-and-results.md only when you need Task06 reference details, output-field definitions, or manual bundle setup notes. Available Scripts Show more Installs 537 Repository nvidia/skills GitHub Stars 1.3K First Seen May 31, 2026 Security Audits Gen Agent Trust Hub Pass Socket Pass Snyk Warn