neuropixels-analysis

Neuropixels Data Analysis Overview Comprehensive toolkit for analyzing Neuropixels high-density neural recordings using current best practices from SpikeInterface, Allen Institute, and International Brain Laboratory (IBL). Supports the full workflow from raw data to publication-ready curated units. When to Use This Skill This skill should be used when: Working with Neuropixels recordings (.ap.bin, .lf.bin, .meta files) Loading data from SpikeGLX, Open Ephys, or NWB formats Preprocessing neural recordings (filtering, CAR, bad channel detection) Detecting and correcting motion/drift in recordings Running spike sorting (Kilosort4, SpykingCircus2, Mountainsort5) Computing quality metrics (SNR, ISI violations, presence ratio) Curating units using Allen/IBL criteria Creating visualizations of neural data Exporting results to Phy or NWB Show more